The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0798
Genome IDAE004437
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHalobacterium salinarum NRC-1; ATCC 700922 [AE004437]
Start position on genome 463914
End posion on genome 463988
Amino Acid Arg
Anticodon TCG
Upstream region at tRNA start position 
gtgggacgca
tRNA gene sequence 
GGGCGCTTAGCTCAGCTTGGACAGAGCACTTGGCTTCGGACCAAGATGCCGCGGGTTCAA
ATCCTGCAGCGCCCActc
Downstream region at tRNA end position 
gattccttcc
Secondary structure (Cloverleaf model)
>At0798	Arg	TCG
                   a      Actc gattccttcc
                     G - C
                     G - C
                     G - C
                     C - G
                     G - C
                     C - G
                     T - A          T A
                    T     C G T C C     A
    T C G A        A      | | + | |     A
  T         C T C G       G C G G G     C
  G         | | | |                 T T
  G         G A G C
    A C A          A     ATGCC
                    C - G
                    T - A
                    T - A
                    G - C
                    G - C
                  C       A
                  T       G
                    T C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCGCTTAGCTCAGCTTGGACAGAGCACTTGGCTTCGGACCAAGATGCCGCGGGTTCAA
ATCCTGCAGCGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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