The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0799
Genome IDAE004437
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHalobacterium salinarum NRC-1; ATCC 700922 [AE004437]
Start position on genome 593999
End posion on genome 594070
Amino Acid Ala
Anticodon GGC
Upstream region at tRNA start position 
atgcgttcgc
tRNA gene sequence 
GGGCTCGTAGATCAGTGGTAGATCATCCCCCTGGCACGGGGAAGGCCTCGGGTTCAAATC
CCGACGAGTCCActc
Downstream region at tRNA end position 
ccgttccttc
Secondary structure (Cloverleaf model)
>At0799	Ala	GGC
                   c      Actc ccgttccttc
                     G - C
                     G - C
                     G + T
                     C - G
                     T - A
                     C - G
                     G - C          T A
                    T     A G C C C     A
        G A        A      | | | | |     A
      T     C T A G       T C G G G     C
      G     | | | |                 T T
      G     G A T C
        T A        A     AGGCC
                    T - A
                    C - G
                    C - G
                    C - G
                    C - G
                  C       C
                  T       A
                    G G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCTCGTAGATCAGTGGTAGATCATCCCCCTGGCACGGGGAAGGCCTCGGGTTCAAATC
CCGACGAGTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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