The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0800
Genome IDAE004437
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHalobacterium salinarum NRC-1; ATCC 700922 [AE004437]
Start position on genome 748778
End posion on genome 748851
Amino Acid Lys
Anticodon CTT
Upstream region at tRNA start position 
ggatgcgttc
tRNA gene sequence 
GGGCCGGTAGCTCAGTCTGGCAGAGCGACGGACTCTTAATCCGTCGGTCGCGTGTTCAAA
TCGCGCCCGGCCCGctt
Downstream region at tRNA end position 
tctgaacgac
Secondary structure (Cloverleaf model)
>At0800	Lys	CTT
                   c      Gctt tctgaacgac
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     C G C G C     A
      T G A        A      | | | + |     A
    C       C T C G       G C G T G     C
    T       | | | |                 T T
    G       G A G C
      G C A        G     CGGTC
                    A - T
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    C T T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCGGTAGCTCAGTCTGGCAGAGCGACGGACTCTTAATCCGTCGGTCGCGTGTTCAAA
TCGCGCCCGGCCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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