The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0802
Genome IDAE004437
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHalobacterium salinarum NRC-1; ATCC 700922 [AE004437]
Start position on genome 852957
End posion on genome 853028
Amino Acid Thr
Anticodon CGT
Upstream region at tRNA start position 
gtcgcggcgc
tRNA gene sequence 
GCCGGTGTAGCTCAGCGGTAGAGCGATTCCTTCGTAAGGAATAGGCCGAGGGTTCAAATC
CCTCCACCGGCTtca
Downstream region at tRNA end position 
ggaagtccgc
Secondary structure (Cloverleaf model)
>At0802	Thr	CGT
                   c      Ttca ggaagtccgc
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     T - A
                     G - C          T A
                    T     C T C C C     A
        G A        A      | | | | |     A
      C     C T C G       G A G G G     C
      G     | | | |                 T T
      G     G A G C
        T A        G     AGGCC
                    A - T
                    T - A
                    T - A
                    C - G
                    C - G
                  T       A
                  T       A
                    C G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGTGTAGCTCAGCGGTAGAGCGATTCCTTCGTAAGGAATAGGCCGAGGGTTCAAATC
CCTCCACCGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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