The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0804
Genome IDAE004437
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHalobacterium salinarum NRC-1; ATCC 700922 [AE004437]
Start position on genome 862573
End posion on genome 862657
Amino Acid Leu
Anticodon CAG
Upstream region at tRNA start position 
acgcgaccga
tRNA gene sequence 
GCAGGGATAGCCAAGTTTGGCCAAAGGCGCAGCGTTCAGGGCGCTGTCCCGTAGGGGTTC
GCAGGTTCAAATCCTGCTCCCTGCAttc
Downstream region at tRNA end position 
gacttctcac
Secondary structure (Cloverleaf model)
>At0804	Leu	CAG
                   a      Attc gacttctcac
                     G - C
                     C - G
                     A - T
                     G - C
                     G - C
                     G - C
                     A - T          T A
                    T     C G T C C     A
    T T G A        A      | | | | |     A
  T         A C C G       G C A G G     C
  G           | | |                 T T
  G         A G G C
    C C A A        G     TCCCGTAGGGGTTC
                    C - G
                    A - T
                    G - C
                    C - G
                    G - C
                  T       G
                  T       G
                    C A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCAGGGATAGCCAAGTTTGGCCAAAGGCGCAGCGTTCAGGGCGCTGTCCCGTAGGGGTTC
GCAGGTTCAAATCCTGCTCCCTGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK