The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0807
Genome IDAE004437
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHalobacterium salinarum NRC-1; ATCC 700922 [AE004437]
Start position on genome 1279229
End posion on genome 1279299
Amino Acid Pro
Anticodon GGG
Upstream region at tRNA start position 
acccagatac
tRNA gene sequence 
GGGACCGTGGGGTAGCGGTATCCTCGGCGCATGGGGTGCGTCGGACTCGAGTTCGAATCT
CGACGGTCCCActc
Downstream region at tRNA end position 
aaaataaggt
Secondary structure (Cloverleaf model)
>At0807	Pro	GGG
                   c      Actc aaaataaggt
                     G - C
                     G - C
                     G - C
                     A - T
                     C - G
                     C - G
                     G - C          T A
                    T     A G C T C     A
        G A        G      | | | | |     G
      C     T G G G       T C G A G     C
      G       | | +                 T T
      G     T C C T
        T A        C     GGAC
                    G - C
                    G + T
                    C - G
                    G - C
                    C - G
                  A       T
                  T       G
                    G G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGACCGTGGGGTAGCGGTATCCTCGGCGCATGGGGTGCGTCGGACTCGAGTTCGAATCT
CGACGGTCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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