The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0808
Genome IDAE004437
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHalobacterium salinarum NRC-1; ATCC 700922 [AE004437]
Start position on genome 1412690
End posion on genome 1412763
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
cgaagtgcgc
tRNA gene sequence 
GGGTCAGTAGCTCAACTAGGTAGAGCGCCACTCTGATAAGGTGGAGGCTTGCGGTTCAAA
TCCGCACTGACCCActa
Downstream region at tRNA end position 
gcggttcgcg
Secondary structure (Cloverleaf model)
>At0808	Ile	GAT
                   c      Acta gcggttcgcg
                     G - C
                     G - C
                     G - C
                     T - A
                     C - G
                     A - T
                     G - C          T A
                    T     A C G C C     A
      C A A        A      | | | | |     A
    T       C T C G       T G C G G     C
    A       | | | |                 T T
    G       G A G C
      G T A        G     AGGCT
                    C - G
                    C - G
                    A - T
                    C - G
                    T + G
                  C       A
                  T       A
                    G A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGTCAGTAGCTCAACTAGGTAGAGCGCCACTCTGATAAGGTGGAGGCTTGCGGTTCAAA
TCCGCACTGACCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK