The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0809
Genome IDAE004437
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHalobacterium salinarum NRC-1; ATCC 700922 [AE004437]
Start position on genome 1417263
End posion on genome 1417310
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
tgctcgcgcc
tRNA gene sequence 
GCGAGGGTGGCCGAGCGGCCAAAGGCGGCGGGCTTAAGACCCGCTCCCGTAGGGGTTCGT
GGGTTCGAATCCCACCTCTCGCAcga
Downstream region at tRNA end position 
gggtggccga
Secondary structure (Cloverleaf model)
>At0809	Leu	TAA
                   c      Acga gggtggccga
                     G - C
                     C - G
                     G - C
                     A - T
                     G - C
                     G + T
                     G - C          T A
                    T     C A C C C     A
      C G A        G      | | | | |     G
    G       G C C G       G T G G G     C
    G         | | |                 T T
    C       A G G C
      C A A        G     TCCCGTAGGGGTTC
                    G - C
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G
                    T A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGAGGGTGGCCGAGCGGCCAAAGGCGGCGGGCTTAAGACCCGCTCCCGTAGGGGTTCGT
GGGTTCGAATCCCACCTCTCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK