The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0811
Genome IDAE004437
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHalobacterium salinarum NRC-1; ATCC 700922 [AE004437]
Start position on genome 1596638
End posion on genome 1596710
Amino Acid His
Anticodon GTG
Upstream region at tRNA start position 
ggatgcagtg
tRNA gene sequence 
TCCGGGGTAGGGTAGTGGACTATCCTTCAGCCTTGTGGAGGCTGAGACGCGGGTTCGATT
CTCGCCCCTGGACctt
Downstream region at tRNA end position 
ttcgcgacga
Secondary structure (Cloverleaf model)
>At0811	His	GTG
                   g      Cctt ttcgcgacga
                     T - A
                     C - G
                     C - G
                     G + T
                     G - C
                     G - C
                     G - C          T T
                    T     C G C T C     A
      T G A        A      | | | + |     G
    G       T G G G       G C G G G     C
    G         | | +                 T T
    A       T C C T
      C T A        T     AGAC
                    C - G
                    A - T
                    G - C
                    C - G
                    C - G
                  T       A
                  T       G
                    G T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
TCCGGGGTAGGGTAGTGGACTATCCTTCAGCCTTGTGGAGGCTGAGACGCGGGTTCGATT
CTCGCCCCTGGAC
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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