The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0812
Genome IDAE004437
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHalobacterium salinarum NRC-1; ATCC 700922 [AE004437]
Start position on genome 1607319
End posion on genome 1607391
Amino Acid Pro
Anticodon TGG
Upstream region at tRNA start position 
gtggtgatac
tRNA gene sequence 
GGGACTGTAGGGTAGCTTGGTATCCTTCGGGCCTTGGGTGCCCGTGACCCCGATTCAAAT
TCGGGCGGTCCCAtac
Downstream region at tRNA end position 
tgtttaatct
Secondary structure (Cloverleaf model)
>At0812	Pro	TGG
                   c      Atac tgtttaatct
                     G - C
                     G - C
                     G - C
                     A - T
                     C - G
                     T + G
                     G - C          T A
                    T     G G G C T     A
      C G A        A      | | | | |     A
    T       T G G G       C C C G A     C
    T         | | +                 T T
    G       T C C T
      G T A        T     TGAC
                    C - G
                    G - C
                    G - C
                    G - C
                    C - G
                  C       T
                  T       G
                    T G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGACTGTAGGGTAGCTTGGTATCCTTCGGGCCTTGGGTGCCCGTGACCCCGATTCAAAT
TCGGGCGGTCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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