The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0813
Genome IDAE004437
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHalobacterium salinarum NRC-1; ATCC 700922 [AE004437]
Start position on genome 1877083
End posion on genome 1877154
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
atcgggaggt
tRNA gene sequence 
GGGCCCATAGCTCAGTGGTAGAGTGCCTCCTTTGCAAGGAGGATGCCCTGGGTTCGAATC
CCAGTGGGTCCAtcc
Downstream region at tRNA end position 
cgttcggggt
Secondary structure (Cloverleaf model)
>At0813	Ala	TGC
                   t      Atcc cgttcggggt
                     G - C
                     G - C
                     G + T
                     C - G
                     C - G
                     C - G
                     A - T          T A
                    T     G A C C C     A
        G A        A      | | | | |     G
      T     C T C G       C T G G G     C
      G     | | | +                 T T
      G     G A G T
        T A        G     ATGCC
                    C - G
                    C - G
                    T - A
                    C - G
                    C - G
                  T       A
                  T       A
                    T G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCATAGCTCAGTGGTAGAGTGCCTCCTTTGCAAGGAGGATGCCCTGGGTTCGAATC
CCAGTGGGTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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