The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0819
Genome IDAE004437
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHalobacterium salinarum NRC-1; ATCC 700922 [AE004437]
Start position on genome 103431
End posion on genome 103358
Amino Acid Val
Anticodon TAC
Upstream region at tRNA start position 
atacgggtac
tRNA gene sequence 
GGGTTCGTGGTCTAGTCGGTCATGACGCGGCCTTTACAAGGCCGAGGTCGGTGGTTCGAA
TCCGCCCGAACCCActc
Downstream region at tRNA end position 
acgttctggt
Secondary structure (Cloverleaf model)
>At0819	Val	TAC
                   c      Actc acgttctggt
                     G - C
                     G - C
                     G - C
                     T - A
                     T - A
                     C - G
                     G - C          T A
                    T     C C G C C     A
      T G A        G      | | + | |     G
    C       T C T G       G G T G G     C
    G         | | |                 T T
    G       T G A C
      T C A        G     AGGTC
                    C - G
                    G - C
                    G - C
                    C - G
                    C - G
                  T       A
                  T       A
                    T A C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGTTCGTGGTCTAGTCGGTCATGACGCGGCCTTTACAAGGCCGAGGTCGGTGGTTCGAA
TCCGCCCGAACCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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