The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0820
Genome IDAE004437
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHalobacterium salinarum NRC-1; ATCC 700922 [AE004437]
Start position on genome 110618
End posion on genome 110546
Amino Acid Arg
Anticodon GCG
Upstream region at tRNA start position 
acctgagtga
tRNA gene sequence 
GTCCGGATAGGGTAGTGGACTATCCTCTTGGCTTGCGGAGCCAGGGACCGGCGTTCAAAT
CGCCGTCCGGACGttc
Downstream region at tRNA end position 
tcacagttct
Secondary structure (Cloverleaf model)
>At0820	Arg	GCG
                   a      Gttc tcacagttct
                     G - C
                     T - A
                     C - G
                     C - G
                     G - C
                     G - C
                     A - T          T A
                    T     G C C G C     A
      T G A        A      | | | | |     A
    G       T G G G       C G G C G     C
    G         | | +                 T T
    A       T C C T
      C T A        C     GGAC
                    T + G
                    T - A
                    G - C
                    G - C
                    C - G
                  T       A
                  T       G
                    G C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GTCCGGATAGGGTAGTGGACTATCCTCTTGGCTTGCGGAGCCAGGGACCGGCGTTCAAAT
CGCCGTCCGGACG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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