The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0822
Genome IDAE004437
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHalobacterium salinarum NRC-1; ATCC 700922 [AE004437]
Start position on genome 602997
End posion on genome 602925
Amino Acid Arg
Anticodon CCT
Upstream region at tRNA start position 
ccggacgtgt
tRNA gene sequence 
GGGCGTGTGGCCAAGCGGACACGGCGAGAGGTTCCTAACCTCTAGATCGCGGGTTCGAGT
CCCGCCACGCCCGtgc
Downstream region at tRNA end position 
agcgaggagc
Secondary structure (Cloverleaf model)
>At0822	Arg	CCT
                   t      Gtgc agcgaggagc
                     G - C
                     G - C
                     G - C
                     C - G
                     G - C
                     T - A
                     G - C          T G
                    T     C G C C C     A
      C G A        G      | | | | |     G
    G       A C C G       G C G G G     C
    G         | | |                 T T
    A       C G G C
      C A          G     AGATC
                    A - T
                    G - C
                    A - T
                    G - C
                    G - C
                  T       A
                  T       A
                    C C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCGTGTGGCCAAGCGGACACGGCGAGAGGTTCCTAACCTCTAGATCGCGGGTTCGAGT
CCCGCCACGCCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK