The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0824
Genome IDAE004437
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHalobacterium salinarum NRC-1; ATCC 700922 [AE004437]
Start position on genome 916381
End posion on genome 916308
Amino Acid Thr
Anticodon TGT
Upstream region at tRNA start position 
atccgggtgc
tRNA gene sequence 
GCCAAGGGAGCTTGGGTGGTCCAAGCACTCGATTTGTAATCGAGAGTTCGTGGGTTCAAA
TCCCACCCTTGGCTtga
Downstream region at tRNA end position 
tacccccttt
Secondary structure (Cloverleaf model)
>At0824	Thr	TGT
                   c      Ttga tacccccttt
                     G - C
                     C - G
                     C - G
                     A - T
                     A - T
                     G - C
                     G - C          T A
                    G     C A C C C     A
      G G G        A      | | | | |     A
    T       T T C G       G T G G G     C
    G       | | | |                 T T
    G       A A G C
      T C C        A     AGTTC
                    C - G
                    T - A
                    C - G
                    G - C
                    A - T
                  T       A
                  T       A
                    T G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCAAGGGAGCTTGGGTGGTCCAAGCACTCGATTTGTAATCGAGAGTTCGTGGGTTCAAA
TCCCACCCTTGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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