The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0825
Genome IDAE004437
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHalobacterium salinarum NRC-1; ATCC 700922 [AE004437]
Start position on genome 920358
End posion on genome 920276
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
cgtcgtgtac
tRNA gene sequence 
GGTGAGGTGGCAGAGCGGCCTATTGCGCCGGTCTTGAAAACCGGTGGCGTCACGCCTCCT
GGGTTCGAATCCCAGCCTCACCGctt
Downstream region at tRNA end position 
ctcgacgtcc
Secondary structure (Cloverleaf model)
>At0825	Ser	TGA
                   c      Gctt ctcgacgtcc
                     G - C
                     G - C
                     T - A
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     G A C C C     A
      C G A        G      | | | | |     G
    G       G A C G       C T G G G     C
    G       + | | |                 T T
    C       T T G C
      C T A        G     TGGCGTCACGCCTC
                    C - G
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    T G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGTGAGGTGGCAGAGCGGCCTATTGCGCCGGTCTTGAAAACCGGTGGCGTCACGCCTCCT
GGGTTCGAATCCCAGCCTCACCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK