The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0826
Genome IDAE004437
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHalobacterium salinarum NRC-1; ATCC 700922 [AE004437]
Start position on genome 990847
End posion on genome 990773
Amino Acid Glu
Anticodon CTC
Upstream region at tRNA start position 
gagtggacgc
tRNA gene sequence 
GCTCCGTTGGTGTAGTCCGGCCAATCATCTTGCCCTCTCACGGCAAGGACTAGGGTTCAA
ATCCCTGACGGAGCAttc
Downstream region at tRNA end position 
caacttcctg
Secondary structure (Cloverleaf model)
>At0826	Glu	CTC
                   c      Attc caacttcctg
                     G - C
                     C - G
                     T - A
                     C - G
                     C - G
                     G - C
                     T - A          T A
                    T     G T C C C     A
    C T G A        G      + | | | |     A
  C         T G T G       T A G G G     C
  G           | | +                 T T
  G         T C A T
    C C A A        C     GGAC
                    T - A
                    T - A
                    G - C
                    C - G
                    C - G
                  C       C
                  T       A
                    C T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCTCCGTTGGTGTAGTCCGGCCAATCATCTTGCCCTCTCACGGCAAGGACTAGGGTTCAA
ATCCCTGACGGAGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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