The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0827
Genome IDAE004437
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHalobacterium salinarum NRC-1; ATCC 700922 [AE004437]
Start position on genome 1028480
End posion on genome 1028396
Amino Acid Leu
Anticodon CAA
Upstream region at tRNA start position 
ctgaatgcgt
tRNA gene sequence 
GCGAGGGTAGCCAAGCTCGGCCAACGGCGACGGACTCAAGATCCGTTCTCGTAGGAGTTC
GAGGGTTCGAATCCCTTCCCTCGCAtcg
Downstream region at tRNA end position 
ccggcgcaca
Secondary structure (Cloverleaf model)
>At0827	Leu	CAA
                   t      Atcg ccggcgcaca
                     G - C
                     C - G
                     G - C
                     A - T
                     G - C
                     G - C
                     G - C          T A
                    T     T T C C C     A
    T C G A        A      + | | | |     G
  C         A C C G       G A G G G     C
  G           | | |                 T T
  G         C G G C
    C C A A        G     TCTCGTAGGAGTTC
                    A - T
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    C A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGAGGGTAGCCAAGCTCGGCCAACGGCGACGGACTCAAGATCCGTTCTCGTAGGAGTTC
GAGGGTTCGAATCCCTTCCCTCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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