The detailed information of tRNA gene sequence
[Important Notice]
tRNA genes in Archaeal genomes were obtained from
"SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology,
"6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution,
"25, 2709-2716, 2008".
Sequence ID | >At0830 |
Genome ID | AE004437 |
Phylum/Class | Euryarchaeota |
Species | Halobacterium salinarum NRC-1; ATCC 700922 [AE004437] |
Start position on genome
|
1154096
|
End posion on genome
|
1154022
|
Amino Acid
|
Val
|
Anticodon
|
CAC
|
Upstream region at tRNA start position
|
actactgtcc
|
tRNA gene sequence
|
GGGTCGGTGGTCTAGTCCGGTTATGACGGCTCCTTCACACGGAGCAGGTCGGCGGTTCAA CTCCGCCCCGACCCAtta
|
Downstream region at tRNA end position
|
cttcgctgcg
|
Secondary structure (Cloverleaf model) | >At0830 Val CAC
c Atta cttcgctgcg
G - C
G - C
G - C
T - A
C - G
G - C
G - C T C
T C C G C C A
C T G A G | | | | | A
C T C T G G G C G G C
G | | | T T
G T G A C
T T A G AGGTC
G - C
C - G
T - A
C - G
C - G
T C
T A
C A C
|
tRNA gene sequence including intron sequence (Lowercase is intron sequence.) | GGGTCGGTGGTCTAGTCCGGTTATGACGGCTCCTTCACACGGAGCAGGTCGGCGGTTCAA CTCCGCCCCGACCCA |
Intron | |
Final decision | ¡û |
Comments | The tRNA gene was obtained from SPLITSdb. |
Genome/Seq. Info. | [Ensembl] |
SPLITSdb | [SPLITSdb] |
Comment |
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Input Comment |
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