The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0833
Genome IDAE004437
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHalobacterium salinarum NRC-1; ATCC 700922 [AE004437]
Start position on genome 1461208
End posion on genome 1461136
Amino Acid Pro
Anticodon CGG
Upstream region at tRNA start position 
tctcacgtgc
tRNA gene sequence 
GGGCCGGTGGGGTAGCTTGGTATCCTTCGGCCTTCGGGTGGCCGTAACCGCGATTCGAAT
TCGCGCCGGCCCActa
Downstream region at tRNA end position 
cacacttacc
Secondary structure (Cloverleaf model)
>At0833	Pro	CGG
                   c      Acta cacacttacc
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G C G C T     A
      C G A        G      | | | | |     G
    T       T G G G       C G C G A     C
    T         | | +                 T T
    G       T C C T
      G T A        T     TAAC
                    C - G
                    G - C
                    G - C
                    C - G
                    C - G
                  T       T
                  T       G
                    C G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCGGTGGGGTAGCTTGGTATCCTTCGGCCTTCGGGTGGCCGTAACCGCGATTCGAAT
TCGCGCCGGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK