The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0834
Genome IDAE004437
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHalobacterium salinarum NRC-1; ATCC 700922 [AE004437]
Start position on genome 1499274
End posion on genome 1499204
Amino Acid Gly
Anticodon CCC
Upstream region at tRNA start position 
agcgcggcgc
tRNA gene sequence 
GCGCTGGTGGTCTAGTGGTAGGACATGAGCTTCCCAAGCTCATAGCCCGGGTTCAATTCC
CGGCCAGCGCAtcc
Downstream region at tRNA end position 
ttcacgcgcc
Secondary structure (Cloverleaf model)
>At0834	Gly	CCC
                   c      Atcc ttcacgcgcc
                     G - C
                     C - G
                     G - C
                     C - G
                     T - A
                     G - C
                     G - C          T T
                    T     G G C C C     A
        G A        G      | | | | |     A
      T     T C T G       C C G G G     C
      G     + | | |                 T T
      G     G G A C
        T A        A     TAGC
                    T - A
                    G - C
                    A - T
                    G - C
                    C - G
                  T       A
                  T       A
                    C C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGCTGGTGGTCTAGTGGTAGGACATGAGCTTCCCAAGCTCATAGCCCGGGTTCAATTCC
CGGCCAGCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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