The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0835
Genome IDAE004437
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHalobacterium salinarum NRC-1; ATCC 700922 [AE004437]
Start position on genome 1542102
End posion on genome 1542021
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
ggaggactgg
tRNA gene sequence 
GCCGGGATGGCCGAATGGCAAAGCGCACGCCTGGAAAGCGTGTCCCCTTACGGGGTTCAG
GGTTCAAATCCCTGTCCCGGCGttt
Downstream region at tRNA end position 
ctcgcgatag
Secondary structure (Cloverleaf model)
>At0835	Ser	GGA
                   g      Gttt ctcgcgatag
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     A - T          T A
                    T     G T C C C     A
        A A        G      | | | | |     A
      T     G C C G       C A G G G     C
      G         | |                 T T
      G     A A G C
        C A        G     TCCCCTTACGGGGTT
                    C - G
                    A - T
                    C - G
                    G - C
                    C - G
                  C       A
                  T       A
                    G G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGATGGCCGAATGGCAAAGCGCACGCCTGGAAAGCGTGTCCCCTTACGGGGTTCAG
GGTTCAAATCCCTGTCCCGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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