The detailed information of tRNA gene sequence
[Important Notice]
tRNA genes in Archaeal genomes were obtained from
"SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology,
"6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution,
"25, 2709-2716, 2008".
Sequence ID | >At0840 |
Genome ID | AM180088 |
Phylum/Class | Euryarchaeota |
Species | Haloquadratum walsbyi DSM 16790 DSM 16790 [AM180088] |
Start position on genome
|
9331
|
End posion on genome
|
9403
|
Amino Acid
|
Gln
|
Anticodon
|
CTG
|
Upstream region at tRNA start position
|
atttgaagat
|
tRNA gene sequence
|
AGTCCCGTGGGGTAGTGGCCAATCCTGTTGCCTTCTGGGGGCAATGACCCAAGTTCGAAT CTTGGTGGGACTActt
|
Downstream region at tRNA end position
|
ttcactctat
|
Secondary structure (Cloverleaf model) | >At0840 Gln CTG
t Actt ttcactctat
A - T
G - C
T - A
C - G
C - G
C - G
G + T T A
T G G T T C A
T G A G | | | | | G
G T G G G C C A A G C
G | | + T T
C T C C T
C A A G TGAC
T - A
T - A
G - C
C - G
C - G
T G
T G
C T G
|
tRNA gene sequence including intron sequence (Lowercase is intron sequence.) | AGTCCCGTGGGGTAGTGGCCAATCCTGTTGCCTTCTGGGGGCAATGACCCAAGTTCGAAT CTTGGTGGGACTA |
Intron | |
Final decision | ¡û |
Comments | The tRNA gene was obtained from SPLITSdb. |
Genome/Seq. Info. | [Ensembl] |
SPLITSdb | [SPLITSdb] |
Comment |
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Input Comment |
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