The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0842
Genome IDAM180088
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHaloquadratum walsbyi DSM 16790 DSM 16790 [AM180088]
Start position on genome 73400
End posion on genome 73475
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
agcgagcagt
tRNA gene sequence 
GCCAAGGTGGCAGAGCCTGGCCTAACGCGTCCGCCTGCAGAGCGGATCATCGCCGGTTCA
AATCCGGCCCTTGGCTtca
Downstream region at tRNA end position 
attaaattga
Secondary structure (Cloverleaf model)
>At0842	Cys	GCA
                   t      Ttca attaaattga
                     G - C
                     C - G
                     C - G
                     A - T
                     A - T
                     G - C
                     G - C          T A
                    T     C G G C C     A
    C C G A        G      | | | | |     A
  T         G A C G       G C C G G     C
  G             | |                 T T
  G         A C G C
    C C T A        G     TCATC
                    T - A
                    C - G
                    C - G
                    G - C
                    C - G
                  C       A
                  T       G
                    G C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCAAGGTGGCAGAGCCTGGCCTAACGCGTCCGCCTGCAGAGCGGATCATCGCCGGTTCA
AATCCGGCCCTTGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK