The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0843
Genome IDAM180088
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHaloquadratum walsbyi DSM 16790 DSM 16790 [AM180088]
Start position on genome 97527
End posion on genome 97598
Amino Acid Thr
Anticodon GGT
Upstream region at tRNA start position
caatatatgt
tRNA gene sequence
GCCTGGGTAGCTTAGCGGTAAAGCGCGTCCTTGGTAAGGACGAGAGCGCGGGTTCAAATC
CCGCCTCAGGCTgtt
Downstream region at tRNA end position
tcctcttgat
Secondary structure (Cloverleaf model)
>At0843	Thr	GGT
                   t      Tgtt tcctcttgat
                     G - C
                     C - G
                     C - G
                     T - A
                     G - C
                     G + T
                     G - C          T A
                    T     C G C C C     A
        G A        A      | | | | |     A
      C     T T C G       G C G G G     C
      G     | | | |                 T T
      G     A A G C
        T A        G     AGAGC
                    C - G
                    G - C
                    T - A
                    C - G
                    C - G
                  T       A
                  T       A
                    G G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCTGGGTAGCTTAGCGGTAAAGCGCGTCCTTGGTAAGGACGAGAGCGCGGGTTCAAATC
CCGCCTCAGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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