The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0844
Genome IDAM180088
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHaloquadratum walsbyi DSM 16790 DSM 16790 [AM180088]
Start position on genome 143369
End posion on genome 143439
Amino Acid Gly
Anticodon CCC
Upstream region at tRNA start position 
ctcatttctc
tRNA gene sequence 
GCGCCGGTGGTCCAATGGTAGGACTCGGGCTTCCCAAGCCCGCGGTCCGGGTTCGATTCC
CGGTCGGCGCActt
Downstream region at tRNA end position 
ttgagtcctc
Secondary structure (Cloverleaf model)
>At0844	Gly	CCC
                   c      Actt ttgagtcctc
                     G - C
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C
                     G + T          T T
                    T     G G C C C     A
        A A        G      | | | | |     G
      T     C C T G       C C G G G     C
      G     | | | |                 T T
      G     G G A C
        T A        T     CGGT
                    C - G
                    G - C
                    G - C
                    G - C
                    C - G
                  T       A
                  T       A
                    C C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGCCGGTGGTCCAATGGTAGGACTCGGGCTTCCCAAGCCCGCGGTCCGGGTTCGATTCC
CGGTCGGCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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