The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0851
Genome IDAM180088
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHaloquadratum walsbyi DSM 16790 DSM 16790 [AM180088]
Start position on genome 1627110
End posion on genome 1627288
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
ctgacttggg
tRNA gene sequence 
GGGGTCGTGGCCAAGCCCGGTATGGCGACTGACTCCAGATCAGTCGATCGGGGGTTCAAA
TCCCTCCGACCCCAtaa
Downstream region at tRNA end position 
taattctctg
Secondary structure (Cloverleaf model)
>At0851	Trp	CCA
                   g      Ataa taattctctg
                     G - C
                     G - C
                     G - C
                     G - C
                     T - A
                     C - G
                     G - C          T A
                    T     C T C C C     A
      C G A        G      | + | | |     A
    C       A C C G       G G G G G     C
    C       | | | |                 T T
    G       T G G C
      G T A        G     CGATC
                    A - T
                    C - G
                    T - A
                    G - C
                    A - T
                  C       A
                  T       G *
                    C C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGTCGTGGCCAAGCCCGGTATGGCGACTGACTCCAGaggcagaccgcccggtgacgat
actccagactgatataccgagcgatcaactgatcattgatcgcagtgacgaccctctggg
gtaccgaggcgcgaaccggagatATCAGTCGATCGGGGGTTCAAATCCCTCCGACCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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