The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0852
Genome IDAM180088
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHaloquadratum walsbyi DSM 16790 DSM 16790 [AM180088]
Start position on genome 1750166
End posion on genome 1750239
Amino Acid Arg
Anticodon CCT
Upstream region at tRNA start position 
agtatataga
tRNA gene sequence 
GGACGTGTGGCCTAGTGGACAAGGGCGAGAGGTTCCTAACCTCTAGATCGCGGGTTCGAA
TCCCGCTACGTCCGtcc
Downstream region at tRNA end position 
gtttttttga
Secondary structure (Cloverleaf model)
>At0852	Arg	CCT
                   a      Gtcc gtttttttga
                     G - C
                     G - C
                     A - T
                     C - G
                     G - C
                     T - A
                     G + T          T A
                    T     C G C C C     A
      T G A        G      | | | | |     G
    G       T C C G       G C G G G     C
    G       + | | |                 T T
    A       G G G C
      C A A        G     AGATC
                    A - T
                    G - C
                    A - T
                    G - C
                    G - C
                  T       A
                  T       A
                    C C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGACGTGTGGCCTAGTGGACAAGGGCGAGAGGTTCCTAACCTCTAGATCGCGGGTTCGAA
TCCCGCTACGTCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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