The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0853
Genome IDAM180088
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHaloquadratum walsbyi DSM 16790 DSM 16790 [AM180088]
Start position on genome 1778178
End posion on genome 1778251
Amino Acid Tyr
Anticodon GTA
Upstream region at tRNA start position 
tatatgataa
tRNA gene sequence 
CCGCCCTTAGCTCAGCCTGGTAGAGCAGTCGACTGTAGATCGACTTGCCCCCCGTTCAAA
TCGGGGAGGGCGGActt
Downstream region at tRNA end position 
cctcaccaaa
Secondary structure (Cloverleaf model)
>At0853	Tyr	GTA
                   a      Actt cctcaccaaa
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     C - G
                     T - A          T A
                    T     G G G G C     A
      C G A        A      | | | | |     A
    C       C T C G       C C C C G     C
    T       | | | |                 T T
    G       G A G C
      G T A        A     TTGCC
                    G - C
                    T - A
                    C - G
                    G - C
                    A - T
                  C       A
                  T       G
                    G T A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
CCGCCCTTAGCTCAGCCTGGTAGAGCAGTCGACTGTAGATCGACTTGCCCCCCGTTCAAA
TCGGGGAGGGCGGA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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