The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0855
Genome IDAM180088
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHaloquadratum walsbyi DSM 16790 DSM 16790 [AM180088]
Start position on genome 2142602
End posion on genome 2142672
Amino Acid Gly
Anticodon GCC
Upstream region at tRNA start position 
ttgcatatgc
tRNA gene sequence 
GCGCTGGTAGTGTAGTGGTATCACGTGACCTTGCCATGGTCACAACCCGGGTTCAAATCC
CGGCCAGCGCAtct
Downstream region at tRNA end position 
ctgtgctttt
Secondary structure (Cloverleaf model)
>At0855	Gly	GCC
                   c      Atct ctgtgctttt
                     G - C
                     C - G
                     G - C
                     C - G
                     T - A
                     G - C
                     G - C          T A
                    T     G G C C C     A
        G A        A      | | | | |     A
      T     T G T G       C C G G G     C
      G       | | |                 T T
      G     T C A C
        T A        G     CAAC
                    T - A
                    G - C
                    A - T
                    C - G
                    C - G
                  T       T
                  T       A
                    G C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGCTGGTAGTGTAGTGGTATCACGTGACCTTGCCATGGTCACAACCCGGGTTCAAATCC
CGGCCAGCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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