The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0856
Genome IDAM180088
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHaloquadratum walsbyi DSM 16790 DSM 16790 [AM180088]
Start position on genome 2299050
End posion on genome 2299124
Amino Acid Glu
Anticodon TTC
Upstream region at tRNA start position 
tagattggac
tRNA gene sequence 
GCTCGGTTGGTGTAGTCCGGCCAATCATGTTGGCCTTTCGAGCCGACGACAGGGGTTCGA
ATCCCCTACCGAGCAttc
Downstream region at tRNA end position 
ttcttgaact
Secondary structure (Cloverleaf model)
>At0856	Glu	TTC
                   c      Attc ttcttgaact
                     G - C
                     C - G
                     T - A
                     C - G
                     G - C
                     G - C
                     T - A          T A
                    T     T C C C C     A
    C T G A        G      | | | | |     G
  C         T G T G       A G G G G     C
  G           | | +                 T T
  G         T C A T
    C C A A        G     CGAC
                    T - A
                    T + G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    T T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCTCGGTTGGTGTAGTCCGGCCAATCATGTTGGCCTTTCGAGCCGACGACAGGGGTTCGA
ATCCCCTACCGAGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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