The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0857
Genome IDAM180088
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHaloquadratum walsbyi DSM 16790 DSM 16790 [AM180088]
Start position on genome 2313946
End posion on genome 2314029
Amino Acid Leu
Anticodon CAA
Upstream region at tRNA start position 
tatgtgtaga
tRNA gene sequence 
GCGAGGGTGGCCGAGTCTGGAAAAGGCGGCGGACTCAAGATCCGCTCTCGTAGGAGTCCG
TGGGTTCAAATCCCTCCCCTCGCAtca
Downstream region at tRNA end position 
tcaattattc
Secondary structure (Cloverleaf model)
>At0857	Leu	CAA
                   a      Atca tcaattattc
                     G - C
                     C - G
                     G - C
                     A - T
                     G - C
                     G - C
                     G - C          T A
                    T     C T C C C     A
    C T G A        G      |   | | |     A
  T         G C C G       G T G G G     C
  G           | | |                 T T
  G         A G G C
    A A A          G     TCTCGTAGGAGTCC
                    G - C
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    C A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGAGGGTGGCCGAGTCTGGAAAAGGCGGCGGACTCAAGATCCGCTCTCGTAGGAGTCCG
TGGGTTCAAATCCCTCCCCTCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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