The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0858
Genome IDAM180088
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHaloquadratum walsbyi DSM 16790 DSM 16790 [AM180088]
Start position on genome 2351746
End posion on genome 2351819
Amino Acid Arg
Anticodon TCT
Upstream region at tRNA start position 
tgttcaatgt
tRNA gene sequence 
GGGCGCGTAGCTCAGTTGGACAGAGCGTCGGACTTCTAATCCGACGGTCGCGGGTTCGAA
TCCCGTCGCGCCCGtcg
Downstream region at tRNA end position 
tcgcagtcat
Secondary structure (Cloverleaf model)
>At0858	Arg	TCT
                   t      Gtcg tcgcagtcat
                     G - C
                     G - C
                     G - C
                     C - G
                     G - C
                     C - G
                     G - C          T A
                    T     T G C C C     A
      T G A        A      + | | | |     G
    T       C T C G       G C G G G     C
    G       | | | |                 T T
    G       G A G C
      A C A        G     CGGTC
                    T - A
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCGCGTAGCTCAGTTGGACAGAGCGTCGGACTTCTAATCCGACGGTCGCGGGTTCGAA
TCCCGTCGCGCCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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