The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0861
Genome IDAM180088
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHaloquadratum walsbyi DSM 16790 DSM 16790 [AM180088]
Start position on genome 2497536
End posion on genome 2497610
Amino Acid Val
Anticodon GAC
Upstream region at tRNA start position 
ctcaccaaat
tRNA gene sequence 
GGGTTGGTGGTCTAGTCTGGTTATGACACCTCCTTGACATGGAGGAGGTCGGCAGTTCAA
ATCTGCCCCAACCCActt
Downstream region at tRNA end position 
atttttatca
Secondary structure (Cloverleaf model)
>At0861	Val	GAC
                   t      Actt atttttatca
                     G - C
                     G - C
                     G - C
                     T - A
                     T - A
                     G - C
                     G - C          T A
                    T     C C G T C     A
    C T G A        G      | | | | |     A
  T         T C T G       G G C A G     C
  G           | | |                 T T
  G         T G A C
    T T A          A     AGGTC
                    C - G
                    C - G
                    T - A
                    C - G
                    C - G
                  T       T
                  T       A
                    G A C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGTTGGTGGTCTAGTCTGGTTATGACACCTCCTTGACATGGAGGAGGTCGGCAGTTCAA
ATCTGCCCCAACCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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