The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0863
Genome IDAM180088
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHaloquadratum walsbyi DSM 16790 DSM 16790 [AM180088]
Start position on genome 2602554
End posion on genome 2602625
Amino Acid His
Anticodon GTG
Upstream region at tRNA start position 
acgcgttgtg
tRNA gene sequence 
TCCGGGTTAGGGTAGTGGTTATCCTTCAGCCTTGTGGAGGCTGAGACGCGGGTTCGATTC
TCGCACCCGGACctt
Downstream region at tRNA end position 
cttccggtgc
Secondary structure (Cloverleaf model)
>At0863	His	GTG
                   g      Cctt cttccggtgc
                     T - A
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     T - A          T T
                    T     C G C T C     A
      T G A        A      | | | + |     G
    G       T G G G       G C G G G     C
    G         | | +                 T T
    T       T C C T
      T A          T     AGAC
                    C - G
                    A - T
                    G - C
                    C - G
                    C - G
                  T       A
                  T       G
                    G T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
TCCGGGTTAGGGTAGTGGTTATCCTTCAGCCTTGTGGAGGCTGAGACGCGGGTTCGATTC
TCGCACCCGGAC
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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