The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0864
Genome IDAM180088
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHaloquadratum walsbyi DSM 16790 DSM 16790 [AM180088]
Start position on genome 213942
End posion on genome 213867
Amino Acid Lys
Anticodon CTT
Upstream region at tRNA start position 
gtatgattat
tRNA gene sequence 
GGGCTGGTAGCTTAGGCTGGTCTAAAGCGTCTGGCTCTTAACCAGAAGATCGAGGATTCA
AATTCCTCCCGGCCCGctt
Downstream region at tRNA end position 
actatatcgt
Secondary structure (Cloverleaf model)
>At0864	Lys	CTT
                   t      Gctt actatatcgt
                     G - C
                     G - C
                     G - C
                     C - G
                     T + G
                     G - C
                     G - C          T A
                    T     C T C C T     A
    C G G A        A      | | | | |     A
  T         T T C G       G A G G A     C
  G         | | | |                 T T
  G         A A G C
    T C T A        G     AGATC
                    T - A
                    C - G
                    T - A
                    G - C
                    G - C
                  C       A
                  T       A
                    C T T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCTGGTAGCTTAGGCTGGTCTAAAGCGTCTGGCTCTTAACCAGAAGATCGAGGATTCA
AATTCCTCCCGGCCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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