The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0867
Genome IDAM180088
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHaloquadratum walsbyi DSM 16790 DSM 16790 [AM180088]
Start position on genome 441214
End posion on genome 441134
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position
tttaaataca
tRNA gene sequence
GCCGGAATGGCCGAGTGGTAAGGCGCACGCCTGGAAAGCGTGTTCCCTCTGGGATCCAGG
GTTCAAATCCCTGTTCCGGCGttt
Downstream region at tRNA end position
ttttattatt
Secondary structure (Cloverleaf model)
>At0867	Ser	GGA
                   a      Gttt ttttattatt
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     A - T
                     A - T          T A
                    T     G T C C C     A
        G A        G      | | | | |     A
      T     G C C G       C A G G G     C
      G       | | |                 T T
      G     A G G C
        T A        G     TTCCCTCTGGGATC
                    C - G
                    A - T
                    C - G
                    G - C
                    C - G
                  C       A
                  T       A
                    G G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGAATGGCCGAGTGGTAAGGCGCACGCCTGGAAAGCGTGTTCCCTCTGGGATCCAGG
GTTCAAATCCCTGTTCCGGCG
Intron
Final decision
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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