The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0868
Genome IDAM180088
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHaloquadratum walsbyi DSM 16790 DSM 16790 [AM180088]
Start position on genome 536804
End posion on genome 536732
Amino Acid Arg
Anticodon GCG
Upstream region at tRNA start position 
gtttatttga
tRNA gene sequence 
GTCCTGGTAGGGTAGTGGACTATCCTCTTGGCTTGCGGAGCCAGGGACCGGAGTTCAAAT
CTCCGTCAGGACGtat
Downstream region at tRNA end position 
ctgagttttt
Secondary structure (Cloverleaf model)
>At0868	Arg	GCG
                   a      Gtat ctgagttttt
                     G - C
                     T - A
                     C - G
                     C - G
                     T - A
                     G - C
                     G + T          T A
                    T     G C C T C     A
      T G A        A      | | | | |     A
    G       T G G G       C G G A G     C
    G         | | +                 T T
    A       T C C T
      C T A        C     GGAC
                    T + G
                    T - A
                    G - C
                    G - C
                    C - G
                  T       A
                  T       G
                    G C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GTCCTGGTAGGGTAGTGGACTATCCTCTTGGCTTGCGGAGCCAGGGACCGGAGTTCAAAT
CTCCGTCAGGACG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK