The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0871
Genome IDAM180088
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHaloquadratum walsbyi DSM 16790 DSM 16790 [AM180088]
Start position on genome 760829
End posion on genome 760757
Amino Acid Thr
Anticodon CGT
Upstream region at tRNA start position 
agtgataagt
tRNA gene sequence 
GCCGGTGTAGCTCAGCTGGAAGAGCGATTCCTTCGTAAGGAATAGGTCGAGAGTTCAAGT
CTCTCCACCGGCTtaa
Downstream region at tRNA end position 
gatcggcttc
Secondary structure (Cloverleaf model)
>At0871	Thr	CGT
                   t      Ttaa gatcggcttc
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     T - A
                     G - C          T G
                    T     C T C T C     A
      C G A        A      | | | | |     A
    T       C T C G       G A G A G     C
    G       | | | |                 T T
    G       G A G C
      A A          G     AGGTC
                    A - T
                    T - A
                    T - A
                    C - G
                    C - G
                  T       A
                  T       A
                    C G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGTGTAGCTCAGCTGGAAGAGCGATTCCTTCGTAAGGAATAGGTCGAGAGTTCAAGT
CTCTCCACCGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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