The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0872
Genome IDAM180088
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHaloquadratum walsbyi DSM 16790 DSM 16790 [AM180088]
Start position on genome 1077666
End posion on genome 1077591
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
aatccaatat
tRNA gene sequence 
GGGCTGGTAGCTTAGATTGGCCCAAAGCATCTGGCTTTTAACCAGAGGATCGAGGGTTCA
AATCCCTCCCGGCCCGttt
Downstream region at tRNA end position 
ttattatttt
Secondary structure (Cloverleaf model)
>At0872	Lys	TTT
                   t      Gttt ttattatttt
                     G - C
                     G - C
                     G - C
                     C - G
                     T + G
                     G - C
                     G - C          T A
                    T     C T C C C     A
    T A G A        A      | | | | |     A
  T         T T C G       G A G G G     C
  G         | | | |                 T T
  G         A A G C
    C C C A        A     GGATC
                    T - A
                    C - G
                    T - A
                    G - C
                    G - C
                  C       A
                  T       A
                    T T T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCTGGTAGCTTAGATTGGCCCAAAGCATCTGGCTTTTAACCAGAGGATCGAGGGTTCA
AATCCCTCCCGGCCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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