The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0873
Genome IDAM180088
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHaloquadratum walsbyi DSM 16790 DSM 16790 [AM180088]
Start position on genome 1689734
End posion on genome 1689660
Amino Acid Glu
Anticodon CTC
Upstream region at tRNA start position 
tatatagcca
tRNA gene sequence 
GCTCCGTTGGTGTAGTCCGGCCAATCATCTTGCCCTCTCACGGCAAGGACTTGGGTTCAA
ATCCCAAACGGAGCAtcc
Downstream region at tRNA end position 
caatctgggg
Secondary structure (Cloverleaf model)
>At0873	Glu	CTC
                   a      Atcc caatctgggg
                     G - C
                     C - G
                     T - A
                     C - G
                     C - G
                     G - C
                     T - A          T A
                    T     A A C C C     A
    C T G A        G      | | | | |     A
  C         T G T G       T T G G G     C
  G           | | +                 T T
  G         T C A T
    C C A A        C     GGAC
                    T - A
                    T - A
                    G - C
                    C - G
                    C - G
                  C       C
                  T       A
                    C T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCTCCGTTGGTGTAGTCCGGCCAATCATCTTGCCCTCTCACGGCAAGGACTTGGGTTCAA
ATCCCAAACGGAGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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