The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0875
Genome IDAM180088
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHaloquadratum walsbyi DSM 16790 DSM 16790 [AM180088]
Start position on genome 1831569
End posion on genome 1831487
Amino Acid Leu
Anticodon TAG
Upstream region at tRNA start position 
taacgaatgt
tRNA gene sequence 
GCGCGGGTAGCCAAGTGGTCAAAGGCGCAGCGCTTAGGACGCTGTCCTATAGAGGTCCGC
AGGTTCGAATCCTGTCCCGCGCActt
Downstream region at tRNA end position 
ggacaactcg
Secondary structure (Cloverleaf model)
>At0875	Leu	TAG
                   t      Actt ggacaactcg
                     G - C
                     C - G
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C          T A
                    T     T G T C C     A
      T G A        A      + | | | |     G
    G       A C C G       G C A G G     C
    G         | | |                 T T
    T       A G G C
      C A A        G     TCCTATAGAGGTCC
                    C - G
                    A - T
                    G - C
                    C - G
                    G - C
                  C       A
                  T       G
                    T A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGCGGGTAGCCAAGTGGTCAAAGGCGCAGCGCTTAGGACGCTGTCCTATAGAGGTCCGC
AGGTTCGAATCCTGTCCCGCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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