The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0876
Genome IDAM180088
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHaloquadratum walsbyi DSM 16790 DSM 16790 [AM180088]
Start position on genome 2068931
End posion on genome 2068861
Amino Acid Pro
Anticodon GGG
Upstream region at tRNA start position 
gtattaacgt
tRNA gene sequence 
GGGACCGTGGGGTAGTGGTATCCTCTGCCGATGGGGTCGGTAGGACCTGAGTTCGATTCT
CAGCGGTCCCAtgg
Downstream region at tRNA end position 
cgttcttttc
Secondary structure (Cloverleaf model)
>At0876	Pro	GGG
                   t      Atgg cgttcttttc
                     G - C
                     G - C
                     G - C
                     A - T
                     C - G
                     C - G
                     G - C          T T
                    T     G A C T C     A
        G A        G      | | | | |     G
      T     T G G G       C T G A G     C
      G       | | +                 T T
      G     T C C T
        T A        C     GGAC
                    T - A
                    G + T
                    C - G
                    C - G
                    G - C
                  A       T
                  T       G
                    G G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGACCGTGGGGTAGTGGTATCCTCTGCCGATGGGGTCGGTAGGACCTGAGTTCGATTCT
CAGCGGTCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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