The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0878
Genome IDAM180088
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHaloquadratum walsbyi DSM 16790 DSM 16790 [AM180088]
Start position on genome 2240879
End posion on genome 2240795
Amino Acid Leu
Anticodon CAG
Upstream region at tRNA start position 
cggagtgcac
tRNA gene sequence 
GCAGGGATAGCCAAGTTTGGTCAACGGCGCAGCGTTCAGGGCGCTGTCCCGTAGGGGTCC
GCAGGTTCAAATCCTGCTCTCTGCActc
Downstream region at tRNA end position 
cagtactgcg
Secondary structure (Cloverleaf model)
>At0878	Leu	CAG
                   c      Actc cagtactgcg
                     G - C
                     C - G
                     A - T
                     G - C
                     G + T
                     G - C
                     A - T          T A
                    T     C G T C C     A
    T T G A        A      | | | | |     A
  T         A C C G       G C A G G     C
  G           | | |                 T T
  G         C G G C
    T C A A        G     TCCCGTAGGGGTCC
                    C - G
                    A - T
                    G - C
                    C - G
                    G - C
                  T       G
                  T       G
                    C A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCAGGGATAGCCAAGTTTGGTCAACGGCGCAGCGTTCAGGGCGCTGTCCCGTAGGGGTCC
GCAGGTTCAAATCCTGCTCTCTGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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