The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0879
Genome IDAM180088
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHaloquadratum walsbyi DSM 16790 DSM 16790 [AM180088]
Start position on genome 2243610
End posion on genome 2243526
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
aaatcagtgt
tRNA gene sequence 
GTTGCGGTAGCCAAGTCTGGCCCAAGGCGCTGGATTGCTAATTCAGTGGCGTAATGCCTC
CGGGGTTCGAATCCCCGCCGCAACGctc
Downstream region at tRNA end position 
atcgaaatca
Secondary structure (Cloverleaf model)
>At0879	Ser	GCT
                   t      Gctc atcgaaatca
                     G - C
                     T - A
                     T - A
                     G - C
                     C - G
                     G - C
                     G - C          T A
                    T     G C C C C     A
    C T G A        A      | | | | |     G
  T         A C C G       C G G G G     C
  G           | | |                 T T
  G         A G G C
    C C C A        G     TGGCGTAATGCCTC
                    C - G
                    T - A
                    G - C
                    G + T
                    A - T
                  T       A
                  T       A
                    G C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GTTGCGGTAGCCAAGTCTGGCCCAAGGCGCTGGATTGCTAATTCAGTGGCGTAATGCCTC
CGGGGTTCGAATCCCCGCCGCAACG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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