The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0880
Genome IDAM180088
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHaloquadratum walsbyi DSM 16790 DSM 16790 [AM180088]
Start position on genome 2261807
End posion on genome 2261734
Amino Acid Thr
Anticodon TGT
Upstream region at tRNA start position 
tgtaattggt
tRNA gene sequence 
GCCAGGGGAGCATGGGCGGTGCATGCACTCGACTTGTAATCGAGACTTCGTGGGTTCAAA
TCCCACCCCTGGCTtct
Downstream region at tRNA end position 
ctcgggagtc
Secondary structure (Cloverleaf model)
>At0880	Thr	TGT
                   t      Ttct ctcgggagtc
                     G - C
                     C - G
                     C - G
                     A - T
                     G - C
                     G - C
                     G - C          T A
                    G     C A C C C     A
      G G G        A      | | | | |     A
    C       T A C G       G T G G G     C
    G       | | | |                 T T
    G       A T G C
      T G C        A     ACTTC
                    C - G
                    T - A
                    C - G
                    G - C
                    A - T
                  C       A
                  T       A
                    T G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCAGGGGAGCATGGGCGGTGCATGCACTCGACTTGTAATCGAGACTTCGTGGGTTCAAA
TCCCACCCCTGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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