The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0882
Genome IDAM180088
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHaloquadratum walsbyi DSM 16790 DSM 16790 [AM180088]
Start position on genome 2671789
End posion on genome 2671716
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
gcttaaccgg
tRNA gene sequence 
GGGCCAATAGCTCAGTCAGGTTGAGCGCTCGGCTGATAACCGGGAGGTCCACGGTTCAAA
TCCGTGTTGGCCCAcct
Downstream region at tRNA end position 
ccttttcaac
Secondary structure (Cloverleaf model)
>At0882	Ile	GAT
                   g      Acct ccttttcaac
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     A - T
                     A - T          T A
                    T     G T G C C     A
      T G A        A      | | | | |     A
    C       C T C G       C A C G G     C
    A       | | | |                 T T
    G       G A G C
      G T T        G     AGGTC
                    C - G
                    T + G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A
                    G A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCAATAGCTCAGTCAGGTTGAGCGCTCGGCTGATAACCGGGAGGTCCACGGTTCAAA
TCCGTGTTGGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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