The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0884
Genome IDAM180088
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHaloquadratum walsbyi DSM 16790 DSM 16790 [AM180088]
Start position on genome 2783682
End posion on genome 2783610
Amino Acid Pro
Anticodon TGG
Upstream region at tRNA start position 
ttataataga
tRNA gene sequence 
GGGATCGTGGGTTAGCTTGGTATACTCCGGGCCTTGGGTGCCCGTGACCCCGGTTCGAAT
CCGGGCGATCCCAtat
Downstream region at tRNA end position 
agtactgatc
Secondary structure (Cloverleaf model)
>At0884	Pro	TGG
                   a      Atat agtactgatc
                     G - C
                     G - C
                     G - C
                     A - T
                     T - A
                     C - G
                     G - C          T A
                    T     G G G C C     A
      C G A        G      | | | | |     G
    T       T T G G       C C C G G     C
    T         | | +                 T T
    G       T A C T
      G T A        C     TGAC
                    C - G
                    G - C
                    G - C
                    G - C
                    C - G
                  C       T
                  T       G
                    T G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGATCGTGGGTTAGCTTGGTATACTCCGGGCCTTGGGTGCCCGTGACCCCGGTTCGAAT
CCGGGCGATCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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