The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0886
Genome IDCP000678
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanobrevibacter smithii ATCC 35061 ATCC 35061; PS; DSMZ 861 [CP000678]
Start position on genome 614072
End posion on genome 614146
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
acattatcat
tRNA gene sequence 
AGGCTAGTGGCACAGCTTGGTTAGCGCGCTCGGCTGATAACCGGGAGGTCATGGGTTCGA
ATCCCATCTAGCCTActt
Downstream region at tRNA end position 
taaaactaat
Secondary structure (Cloverleaf model)
>At0886	Ile	GAT
                   t      Actt taaaactaat
                     A - T
                     G - C
                     G - C
                     C - G
                     T - A
                     A - T
                     G - C          T A
                    T     T A C C C     A
    T C G A        G      | | | | |     G
  T         C A C G       A T G G G     C
  G         |   | |                 T T
  G         G C G C
    T T A          G     AGGTC
                    C - G
                    T + G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A
                    G A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
AGGCTAGTGGCACAGCTTGGTTAGCGCGCTCGGCTGATAACCGGGAGGTCATGGGTTCGA
ATCCCATCTAGCCTA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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