The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0890
Genome IDCP000678
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanobrevibacter smithii ATCC 35061 ATCC 35061; PS; DSMZ 861 [CP000678]
Start position on genome 1204158
End posion on genome 1204229
Amino Acid Val
Anticodon TAC
Upstream region at tRNA start position
gatgtactat
tRNA gene sequence
GGTTCCGTGGTCTAGTGGTATGATACCTCCCTTACAAGGAGGGGATCACGAGTTCGAATC
TCGTCGGAACCActt
Downstream region at tRNA end position
cttaactatt
Secondary structure (Cloverleaf model)
>At0890	Val	TAC
                   t      Actt cttaactatt
                     G - C
                     G - C
                     T - A
                     T - A
                     C - G
                     C - G
                     G - C          T A
                    T     T G C T C     A
        G A        G      | | | | |     G
      T     T C T G       A C G A G     C
      G       | | +                 T T
      G     T G A T
        T A        A     GGATC
                    C - G
                    C - G
                    T - A
                    C - G
                    C - G
                  C       A
                  T       A
                    T A C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGTTCCGTGGTCTAGTGGTATGATACCTCCCTTACAAGGAGGGGATCACGAGTTCGAATC
TCGTCGGAACCA
Intron
Final decision
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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